Scores cell cycle phases — add.cell.cycle • IBRAP

Scores each cell in which cell cycle stage it is currently in.

add.cell.cycle(object = obj, assay = 'RAW', slot = 'counts')

Arguments

object: IBRAP S4 class object
assay: A character string containing indicating which assay to use
slot: String indicating which slot within the assay should be sourced
transform: Boolean. If raw counts are supplied, this must be TRUE to normalise data
verbose: Logical should function messages be printed?
seed: Numerical What seed should be set. Default = 1234

Value

IBRAP S4 class object containing cell cycle assignments and scores for each cell in the metadata

Examples