Calculates the fraction of counts from genes matching a pattern string — find_percentage_genes • IBRAP

Subsets gene names that match the pattern supplied. The percentage fraction of this gene group is then calculated.

find_percentage_genes(object = obj, pattern = '^MT-', assay = 'RAW', slot = 'RAW', column.name = 'RAW_percent.mt')

Arguments

object: IBRAP S4 class object
pattern: A character string containing a pattern to identfiy in rownames
assay: String indicating which assay to source the raw counts from
slot: String indicating which slot within the assay should be sourced
column.name: String naming the column name in the metadata
verbose: Logical should function messages be printed?

Value

IBRAP S4 class object containing highly varaible genes within the source assay

Examples