Interactive plot of reduced dimensions and labels

# S3 method for reduced.dim.interactive
plot(
  object,
  reduction,
  assay,
  clust.method,
  column,
  pt.size = 5,
  dimensions,
  cells = NULL,
  ...
)

Arguments

object: An IBRAP S4 class object
reduction: Character. Which reduction to use to display points
assay: Character. Which assay within the object to access
clust.method: Character. Which clustering method to access, supply the name of any dataframe contained in the cluster_assignments sections. If you wish to access metadata, just specify 'metadata'
column: Character. Which column to access within the supplied clust.column
pt.size: Numeric. What should the point size be
dimensions: Numeric. How many dimensions should be displayed, can be either 2 or 3
cells: Numeric. Which cells should be subset for plotting, Default = NULL

Value

An interactive plot of reduced dimensions annotated with assignments