Plot reduction explained variance — plot.variance • IBRAP

Shows the explained variance for a reduction for selecting how many dimensions to use downstream

# S3 method for variance
plot(object, assay, reduction, ...)

Arguments

object: IBRAP S4 class object
assay: Character. String containing indicating which assay to use
reduction: Character. Which reductions to access within the supplied assays
...: Arguments to be passed to ggpubr::ggarrange

Value

Plots showing the supplied reductions explained variance

Examples


object <- plot.variance(object = object, 
                        assay = c('SCT', 'SCRAN', 'SCANPY'), 
                        reduction = 'pca')
#> Error in is(object = object, class2 = "IBRAP"): object 'object' not found