Plot of violin plot of defined features

Plot of violin plot of defined features

# S3 method for vln
plot(
  object,
  assay,
  slot,
  features,
  group.by,
  title = NULL,
  xlab = "group",
  ylab = "expression"
)

Arguments

object

An IBRAP S4 class object

assay

Character. Which assay within the object to access

slot

Character. Which expression matrix would you like to access. Default = 'normalised'

features

Character. Which features should be plotted, it is not recommended to exceed 3 but can be more if your screen size is larger.

group.by

Vector. What should the cell types be split by.

title

Character. What should be the overall title of the plot. Default = NULL

xlab

Character. What should by the x axis title. Default = 'group'

ylab

Character. What shoul be the y axis title. Default = 'expression'

Value

A violin plot of defined gene expression and groups